Crystallography & Symmetry
patterns derived from their groups
Series

Chirality — the series

5 essays on one idea, from the one that introduces it to the one that assumes the rest.
  1. p4m: 4 and 4. The standard motif — three points in no particular arrangement — repeated by p4m, with each copy coloured by the sign of the area of the triangle it makes. 4 copies have one sign and 4 the other, because the group contains an operation that reverses orientation. A structure built from one enantiomer cannot sit here: the group would put its mirror image in the same crystal. The colours were computed from the coordinates rather than assigned.

    The groups a single hand may sit in

    A protein is built from one enantiomer of every amino acid, and a crystal of it contains nothing else. That single fact deletes most of the classification at a stroke: any operation reversing orientation would put the other hand in the same crystal. The criterion is one line of arithmetic, and in the plane the enumeration is complete — five of the seventeen.

    part 1 · space-groups
  2. A triangle sliding from one mirror to another. Two vertices fixed and the third slid along a line. At the left end the triangle is isoceles about the vertical, at the right end it is isoceles about a different line, and both ends have a mirror — so the measure is exactly zero at both, by cancellation rather than by a search running out. Between them the triangle has no mirror at all and the measure rises to 0.0422. The faint curve is the handedness over the same family, which is a different quantity: it has a sign, it is largest where the measure is not, and it does not vanish at either end.

    How chiral, as a number

    A group answers one bit: a set either has an improper symmetry or it does not. Two shapes can both be chiral and one of them be a mirror-symmetric thing with a substituent out of place while the other is a helix, and nothing in the classification says which is which. A distance does.

    part 2 · space-groups
  3. One achiral motif in p4, chiral along one line and achiral along two. The same motif — three points with a mirror and no other symmetry — repeated by p4, the plane group of quarter-turns with no mirror, and placed with its mirror along three different lines of the square lattice. Along the first line the pattern has no operation that reverses orientation: it is chiral, although every piece of it is achiral. Along the second and third the motif's mirror is also a mirror of the whole pattern, and the detected groups are p4m and p4g; the mirror lines of each pattern are drawn. All three verdicts come from detecting the symmetry of the points and agree with whether the motif's mirror normalises p4.

    A hand made of pieces that have none

    Quartz is built from tetrahedra that have no handedness, and every quartz crystal is left-handed or right-handed anyway. Put a piece with a mirror into a pattern whose group has none, and the pattern keeps the piece's mirror only if that mirror lies on one of a few lines the group's normaliser draws. Anywhere else, the arrangement has a hand its parts do not.

    part 3 · space-groups
  4. Seventeen plane groups, and one chiral sheet over each. The seventeen plane groups, whether each is chiral as a pattern in the plane, how many sheets can be built over it by giving each operation a sign on the sheet's normal — 63 in all — and which of those sheets is chiral in space. There is always exactly one. For the five groups chiral in the plane it is the sheet whose two faces differ and nothing turns it over. For the twelve achiral in the plane it is the sheet turned over by exactly the operations that reverse orientation in the plane, so that every mirror line becomes a half-turn axis lying in the sheet.

    Chiral in the plane is not chiral in the room

    A pattern with mirrors all over it can be a sheet with a hand, and a pattern with no mirror can be a sheet without one. Whether a layer is chiral depends on what each of its operations does to the side of the sheet, and over every one of the seventeen plane groups exactly one sheet is chiral in space.

    part 4 · space-groups
  5. A thread's two signs, and the four kinds of operation. Every operation of a rod group carries the axis to itself, so it does two independent things: it keeps or reverses the direction along the thread, by a sign σ, and it keeps or reverses the handedness of the plane across the thread, by the determinant of a 2 × 2 matrix. The determinant in space is the product, so the shaded cells are the proper operations — a turn or screw about the axis, and a half-turn crossing it — and the unshaded ones are the improper. A rod group is chiral when all of its operations sit on the shaded diagonal, and polar along its axis when all of them sit on the top row. The two conditions pick out different diagonals of the same square, which is why neither implies the other.

    A thread's hand is not a choice

    A sheet's handedness in space depends on a sign that the plane pattern does not fix, so one plane group carries several sheets and exactly one of them is chiral. A thread has no such freedom: 32 of the 75 rod groups are chiral, they sit over 9 of the 27 axial classes, and which they are is settled before any structure is drawn. Only its direction depends on how the class lies along it.

    part 5 · space-groups

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