Crystallography & Symmetry
patterns derived from their groups
Concept

Bessel function — where it appears

The solution of a differential equation that describes a wave in cylindrical coordinates, indexed by an integer order. The one of order n vanishes at the origin unless n is nought and stays negligible until its argument is about n, which is why the diffraction of a helix has no intensity near the axis on most of its layer lines.

Named by 5 essays across 2 fields — each of them below, with the objects they name alongside it.

A chain modulated at q = 0.211. The lower row is the lattice: 34 sites, evenly spaced. The upper row is the structure: the same sites displaced by a wave of amplitude 0.12 of a spacing and wavevector 0.211, drawn through them. Because 0.211 is not a ratio of small whole numbers, no cell of any size holds the structure — the displacement pattern never repeats — and yet the atoms are nowhere near random: each one is exactly where a single sine wave says it should be. That is what an incommensurately modulated crystal is, and its diffraction pattern is sharp.

The satellites that need a second integer

A crystal whose atoms are displaced by a wave of the wrong wavelength has no unit cell at all, and diffracts to sharp spots anyway. Indexing them takes two integers per reflection instead of one — and the intensities of the extra spots are Bessel functions, which is a check the arithmetic can be made to pass.

aperiodic · Modulation The cross, from the selection rule alone. The layer lines of a helix with the first maximum of each marked on both sides. Nothing here is a picture of a photograph: each mark is at the radius where the Bessel function of the lowest order the selection rule permits on that layer line first peaks, and that radius is proportional to the order. The order rises by one per layer line until the middle of the repeat, so the maxima lie on two straight lines through the origin — the X — and the larger marks are the layer lines that reach the axis.

What a thread scatters

A helix with ten subunits in a turn is not a screw axis a crystal may have, and nothing about its diffraction pattern is lawless. The pattern lies on layer lines, and on each one only certain angular orders may contribute — a selection rule as hard as any extinction condition. The lowest permitted order rises by one per layer line, a Bessel function of order n does nothing until its argument is about n, and the maxima therefore lie on two straight lines through the origin.

classification · Subperiodic Two waves that are each symmetric enough make a lopsided pair. The first-order satellite amplitudes at h − q and h + q around the main reflections h = 1 to 4, for three chains: an occupation wave on the lattice, whose pairs are equal; the strain wave alone, the displacement the size effect produces with every site equally full, whose satellites are weak and grow with h; and both together. Together the pairs are unequal, the low side stronger, by an amount that grows from one reflection to the next — an imbalance neither wave has on its own, from a displacement of less than a hundredth of a spacing.

The strain wave that tips the satellites

An occupation wave puts equal satellites on both sides of every main reflection, and a strain wave a hundredth of a lattice spacing high is enough to tip them. Real composition waves drag such a strain with them, because atoms of different sizes want different spacings, and the tilt that results is not a nuisance. To first order it does not depend on how strong the occupation wave is at all. It reads the size mismatch directly, and its sign says which species is the larger.

aperiodic · Modulation Second-order satellites that only the strain makes. Satellite intensities on a logarithmic scale around the first four main reflections of a chain whose occupation is a pure cosine wave, with no strain and with the strain a size factor of 0.1 brings. Without strain the second-order satellites are absent, down at the chain's numerical floor; with it they appear at between a ten-thousandth and a hundredth of the first order's intensity, larger on the outer side of each reflection and growing with its order.

The second order reads the strain again

An occupation wave with a pure cosine profile has no second harmonic, so on its own it makes no second-order satellites. Strain the chain by the size difference of its atoms and they appear. Their strength measures the square of the displacement and cannot see its phase, where the tilt of the first-order pair measures the displacement times the cosine of its phase. So the two give the size factor twice, and the two readings agree only if the strain sits where a size effect puts it.

aperiodic · Modulation The h = 1 anomaly moves with the length of the chain. For a size-coupled chain with ε = 0.03, the ratio of the second-order pair's tilt, divided by k², to the first-order tilt at h = 1, from plain sums over the sites and from sums with a smooth window, for 22 chain lengths from 10,000 to 480,000 sites. The plain ratio swings between -0.08 and 5.60; at 30,000 and 120,000 sites, the two lengths first tried, it sits near 0.31 both times. The windowed ratio is one half at every length.

The satellite beside the zero-order reflection

An earlier essay found that the second-order satellites of a modulated chain tilt half as far as the first-order ones at every reflection but the first, where they tilted a third as far, the same on chains of 30,000 and 120,000 sites. It left the departure unexplained and proposed a higher order of the expansion. The expansion was never wrong. The weak satellite at h = 1 sits a quarter of a reciprocal unit from the strongest reflection a chain has, and a plain sum over a finite chain carries that reflection's tail, which does not shrink steadily as the chain grows. It swings, and the two lengths tried happened to swing to the same place.

aperiodic · Modulation

Named alongside it

The objects these essays reach for when they reach for this one.

Satellite reflectionStructure factorIncommensurateModulationThe Fourier transformCrystallographic restrictionDiffraction symbolGolden ratioIndexingMeasurementModulated structureOccupancy

All concepts