Crystallography & Symmetry
patterns derived from their groups
Concept

Multiplicity — where it appears

How many equivalent items a single entry stands for, whether reflections at one spacing or points in one orbit. It is the number that turns a list of unique things back into the full count, and it is smaller at a special position than at a general one.

Named by 10 essays across 6 fields — each of them below, with the objects they name alongside it.

{111} in class m3̅m. The form {111} of crystal class m3̅m: 8 faces, being the orbit of one face under the 48 operations of the class, with a stabiliser of order 6. 4 poles lie in the upper hemisphere or in the plane of the page and are drawn filled; the other 4 lie below and are drawn open at the same positions, which is the stereographic convention and the reason only the upper ones carry their indices. The form is closed: the faces enclose a volume, so a crystal can be bounded by this form alone.

A form is an orbit, and whether it closes is an integer question

Name one face of a crystal and its class names the rest. That set is a form, it is an orbit in exactly the sense this site has used since its first essay, and whether it encloses a volume — whether a crystal could be bounded by it alone — is decided without any lengths or angles entering the calculation anywhere.

applied · Forms 168 reflections, 26 rings, one axis. Every reflection of a square lattice out to indices of 6, drawn as a point of the reciprocal lattice with the rings of equal length it lies on. A single crystal gives each point its own place on a detector; a powder is every orientation at once, so what is measured is the ring rather than the point, and the 168 reflections arrive as 26 lines on the single axis at the right, with height the number sharing each. The rings are found by sorting the lengths and grouping equal ones, and every point is checked to sit on the ring it was given. 1 of the rings are marked: they hold reflections that no operation of the lattice's point group relates, so the collapse has added together two genuinely independent measurements and no experiment can take them apart again.

What a powder pattern loses

Grind a crystal up and every orientation is present at once, so a two-dimensional pattern of spots collapses onto a single axis. Reflections that had their own places arrive together, and some of the coincidences are exact and have nothing to do with symmetry.

diffraction · Diffraction Special positions in p4m. Every point of a 12×12 grid inside the cell of p4m, drawn at a size set by how many operations fix it. 80 of the 144 are general — nothing but the identity leaves them alone, so their orbit is the full 8 points. The other 64 are special, and fall into 3 kinds: 60 points fixed by 2 operations, with orbits of 4; 2 points fixed by 4 operations, with orbits of 2; 2 points fixed by 8 operations, with orbits of 1.

The points a group treats differently

Almost every point of a cell has an orbit as long as the group. The exceptions are the points some operation leaves alone, and they are where atoms sit, where a structure's formula comes from, and where a careless motif destroys the group it was meant to illustrate.

operations · Fundamental domain The general positions of P2₁/c. Space group P2₁/c, number 14, projected down c on a primitive monoclinic cell. 12 general positions, the orbit of a three-point asymmetric motif, each labelled with its height along c and marked with a comma where the operation that produced it reversed handedness.

One part in however many, and why it is never quite that

A crystal's contents are the asymmetric unit repeated by the group. The unit's volume is the cell's divided by the order of the group — except that it is always a little more, and the excess is exactly the special positions counted whole.

operations · Fundamental domain The shells of the hexagonal lattice. Every point of the hexagonal lattice within a squared distance of 24, with a circle drawn at each length that occurs. The form is x² + xy + y², and the number of points on each circle is a coefficient of the lattice's theta series: 6 at 1, 0 at 2, 6 at 3, 6 at 4, 0 at 5, 0 at 6, 12 at 7, 0 at 8. The gaps matter as much as the counts — a circle with no points on it is a length the lattice does not have, and which lengths those are is a question in number theory rather than in geometry.

How many vectors of each length

Counting the lattice points at each distance from the origin turns out to be a question about divisors, and the answer explains something a crystallographer meets every day: why a cubic powder pattern has no line at seven.

lattices · Lengths Everything measurable at λ = 1.54 Å, and it is a finite set. A section through the reciprocal lattice of a cubic cell of 10 Å, with the limiting sphere drawn. Bragg's law reaches a reflection only if its spacing is at least half the wavelength, so the measurable reflections are the lattice points inside a sphere of radius 2/λ and the points outside it are not merely unmeasured — no experiment at this wavelength can reach them. In this section 516 points lie inside; in the full sphere there are 9,092.

How many reflections there are

The reciprocal lattice is infinite and a measurement is not. A wavelength cuts a sphere out of it, the number of points inside is the sphere's volume times the cell's, and symmetry then removes all but a fraction — though never quite the fraction a division would give.

diffraction · Resolution orders 5 and 7 reach a site of symmetry 1 and no more. A molecule whose only symmetry is one n-fold axis, and the highest site symmetry it may occupy in any of the 45 space groups this site builds. The site's symmetry has to be a subgroup of the molecule's, so the site's order must divide n and the site group must be cyclic. Orders 1, 2, 3, 4 and 6 reach a site of their own order. Orders 5 and 7 reach one, because no site symmetry in any space group contains an operation of order five or seven — the orders available are 1, 2, 3, 4, 6, computed by asking every operation of every group whether it moves a point. A five-fold molecule keeps its axis; the crystal simply has no use for it.

What a molecule gives up to sit in a crystal

A molecule brings its own symmetry. A crystal offers sites with symmetries of their own, and the two have to be compatible — the site's symmetry must be a subgroup of the molecule's. So a molecule may always keep more than its site offers, and a molecule with a five-fold axis may sit only where the crystal offers nothing at all.

restriction · Local symmetry An orbit of 12 points under 6mm, split into 6 kinds. The functions defined on one orbit of 12 points under 6mm form a space of that dimension, and the group acts on it by permuting the points. The character of that action is the cheapest one in the subject — at each operation it is the number of points left where they are — and decomposing it against the table gives the multiplicities on the right. They are whole numbers, they weight the dimensions to 12 again, and the multiplicity of the trivial representation is the number of orbits, which is Burnside's lemma arriving as a special case.

The shell that splits into kinds

The neighbours of an atom carry a space of functions as large as the shell, and the group does not treat that space as one thing. It splits into pieces of a few kinds, in whole numbers, and the count is the cheapest character in the subject: how many neighbours each operation leaves where they are.

point-groups · Representations What each Laue class buys, in measurements per reflection. The eleven Laue classes, with how many distinct reflections a block of indices holds under each and how many times a data set measures the average one. The redundancy is always below the order of the class and the gap is the special reflections. This is the number an experiment is planned around: repeated measurements of what symmetry says must agree are the only estimate of precision that does not come from a model, so a triclinic crystal has to be turned through far more of the sphere than a cubic one to be measured as well.

Every reflection, several times over

A diffraction experiment does not measure each reflection once. Symmetry relates a reflection to the others of its orbit, and those are the same reflection seen from another direction — so a hundred thousand measurements may contain twelve thousand reflections, each observed eight times.

diffraction · Resolution The average is the site's orbit, with occupancies. A molecule at a site of symmetry mmm keeping a subgroup of order two takes four orientations, and the average over them is the site group's orbit of each of the molecule's atoms, every image at one over the length of its own orbit. Atoms in general positions give eight images at an eighth each, and give the same eight whichever subgroup the molecule keeps. Atoms on a locus the model keeps give a shorter orbit at a higher occupancy, drawn larger and darker, and those are the only atoms that differ between models. The total scattering is the same for every model, so all of them agree exactly at zero scattering angle.

The molecule size that hides a disorder

Two disorder models with the same occupancy leave averaged structures that differ only in a handful of partial atoms. The difference is 20% in structure factors for a ten-atom molecule and 3% for a sixty-atom one — so the data choose between the models for a small molecule and stop choosing for a large one, and seven pairs are identical at any size.

restriction · Local symmetry

Named alongside it

The objects these essays reach for when they reach for this one.

OrbitSpecial positionStabiliserSite symmetryWyckoff positionsLaue classPowder diffractionReciprocal latticeResolutionUnique reflectionsAccidental overlapAsymmetric unit

All concepts